if you can do a compare and edit, look in the default inner_index.htm
compared to the new template file and find the missing on load codes
<!--[onload;block=features_audio;when [var.enable_audio]=1;comm]-->
<!--[onload;block=features_blogs;when [var.enable_blogs]=1;comm]-->
those hide or show those divs/blocks and i would guess are still missing.